TranscriptML

Contents

  • Installation
  • Usage
  • RBPNet/eCLIP data workflow
  • Training Configuration
  • API reference
TranscriptML
  • Overview: module code

All modules for which code is available

  • torch
  • transcriptml.data.builders
  • transcriptml.data.bundle
  • transcriptml.data.controls
  • transcriptml.data.encoding
  • transcriptml.data.genomics
  • transcriptml.data.schemas
  • transcriptml.interpret.ablation
  • transcriptml.interpret.codon_ism
  • transcriptml.interpret.context
  • transcriptml.interpret.epistasis
  • transcriptml.interpret.ism
  • transcriptml.interpret.motifs
  • transcriptml.interpret.predictor
  • transcriptml.interpret.region_ablation
  • transcriptml.interpret.window_ism
  • transcriptml.models.cnn
  • transcriptml.models.legnet
  • transcriptml.models.rbpnet
  • transcriptml.models.registry
  • transcriptml.models.reproduce
  • transcriptml.models.saluki
  • transcriptml.plotting.single_nt_ism
  • transcriptml.rbpnet.bundle
  • transcriptml.rbpnet.dataset
  • transcriptml.rbpnet.evaluation
  • transcriptml.rbpnet.evaluation_metrics
  • transcriptml.rbpnet.experiment
  • transcriptml.rbpnet.losses
  • transcriptml.rbpnet.preprocessing
  • transcriptml.rbpnet.selection
  • transcriptml.rbpnet.training
  • transcriptml.rbpnet.windows
  • transcriptml.training.evaluation
  • transcriptml.training.losses
  • transcriptml.training.metrics
  • transcriptml.training.splits
  • transcriptml.training.trainer
  • transcriptml.workflows.chromosome_cv
  • transcriptml.workflows.init_run

© Copyright 2026, Isaac Vock.

Built with Sphinx using a theme provided by Read the Docs.